It is usually possible to pay particular fees in CU libraries in cash directly. Some CU libraries also offer payment by bank transfer or bank card.
| Faculty / Department | Payment method |
| 1st Faculty of Medicine | cash, credit card, bank transfer |
| 2nd Faculty of Medicine | cash, bank transfer |
| 3rd Faculty of Medicine | cash, credit card |
| Center for Economic Research and Graduate Education – Economics Institute | only cash |
| Faculty of Medicine in Hradec Králové | only cash |
| Faculty of Medicine in Plzeň | only cash |
| Protestant Theological Faculty | cash, bank transfer |
| Faculty of Humanities | cash, credit card, bank transfer |
| Faculty of Social Sciences | Hollar: cash, credit card Jinonice: cash, credit card, bank transfer Opletalova: only cash |
| Faculty of Physical Education and Sport | only cash |
| Faculty of Pharmacy in Hradec Králové | cash, credit card, bank transfer |
| Faculty of Arts | cash, credit card, bank transfer |
| Hussite Theological Faculty | only cash |
| Catholic Theological Faculty | only cash |
| Faculty of Mathematics and Physics | cash, bank transfer |
| Faculty of Education | Celetná: cash, bank transfer Rettigova: cash, credit card, bank transfer |
| Faculty of Law | cash, credit card, bank transfer |
| Faculty of Science | library of Biology – cash, bank transfer library of Geology – cash, bank transfer library of Geography – cash, bank transfer library of Chemistry – cash, bank transfer library of Ecology – only cash |
